Fig. 11

Chromatin loops, CTCF binding and other features of the Sox1 locus. Sox1 coding regions and majority of overlapping Sox1ot are highlighted in yellow. The Sox1 gene body is located between two large upstream 430 kb and downstream 160 kb TADs (T1 and T2), respectively. See Fig. 10 for individual track description. Specific CTCF peaks and loops discussed in the text are marked by numbered arrows and dotted boxes (1–6) and L1-L7, respectively. See Fig. 10 for individual track description.